This is a list of bays along the Atlantic coast of Maine, roughly in order from northeast to southwest, and divided by county.
- Passamaquoddy Bay
 - Cobscook Bay
- Dennys Bay
 - East Bay
 - Sipp Bay
 - South Bay
 - Straight Bay
 - Whiting Bay
 
 - Johnson Bay
 - Little Machias Bay
 - Machias Bay
- Holmes Bay
 - Little Bay
 
 - Little Kennebec Bay
 - Englishman Bay
- Mason Bay
 
 - Chandler Bay
 - Eastern Bay
- Alley Bay
 
 - Western Bay
 - Pleasant Bay
 - Narraguagus Bay
- Back Bay
 - Flat Bay
 - Harrington Bay
 
 - Pigeon Hill Bay
 - Dyer Bay
- Pinkham Bay
 
 - Gouldsboro Bay
- Joy Bay
 - West Bay
 
 
- Winter Harbor
 - Frenchman Bay
- Eastern Bay
 - Flanders Bay
 - Taunton Bay
- Egypt Bay
 - Hog Bay
 
 - Thomas Bay
 - Youngs Bay
 
 - Eastern Way
 - Somes Sound
 - Western Way
 - Western Bay
 - Union River Bay
 - Blue Hill Bay
 
- Penobscot Bay
 - Belfast Bay
 - Gilkey Harbor
 - Seal Bay
 
- Rockport Harbor
 - Clam Cove
 - Rockland Harbor
 - Muscongus Bay
 
- Johns Bay
 - Linekin Bay
 - Boothbay Harbor
 - Booth Bay
 - Sheepscot Bay
 - Montsweag Bay
 - Hockomock Bay
 
- Merrymeeting Bay
 - Sagadahoc Bay
 
- Quahog Bay
 - Harpswell Sound
 - Middle Bay
 - Maquoit Bay
 - Casco Bay
 
Also,
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